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BLAST and FASTQ dataset
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- need help for this subject. below are the initial discussions.
- if you have other helping ideas, we can discuss in this thread.
- panda: anyone know BLAST and FASTQ dataset format so I can ask questions?
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- 老头乐: 没听说过，但你有问题尽管问。。 回复 删除
- panda: in need import NCBI NT database (nucleotide sequence/DNA) into mysql tables so I can match my testing/unknown sequence against the NT database 回复 删除
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老头乐: 笨办法是先export, 再import...一听就是笨MM。。
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- panda: "export" from where? 回复 删除
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waspking: NCBI genbank stuff? heard of fastq from my postdoc
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- panda: would you ask your postdoc if he knew how to import NCBI NT database (nucleotide sequence/DNA) into mysql tables ? I don't have money for it now, but if I could get it work, there is a lot money 回复 删除
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deepocean: 国宝原来是生物系MM啊？
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waspking: he is gone. I always though panda is a male
you
should be able to save the data in such a format to be compatible with
mysql so it can be done automatically? I am sure this has been done
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- panda: yes, and I am 18 回复 删除
- panda: "save the data" from where? 回复 删除
- waspking: you can download from NCBI. 回复 删除
- panda: links? 回复 删除
- waspking: c: http://researchremix.wordpress.com/2008/08/15/importing-pubmed-medline-details-into-mysql-database/ 回复 删除
- waspking: http://www.biostars.org/p/14382/ 回复 删除
- waspking: downloading: http://www.ncbi.nlm.nih.gov/guide/howto/dwn-records/ 回复 删除
- waspking: download by ftp: http://www.ncbi.nlm.nih.gov/Ftp/ 回复 删除
- panda: thanks. seems a PubChem link. I am actually looking for BLAST DB in here http://www.ncbi.nlm.nih.gov/Ftp/ 回复 删除
